Ok, well in the dir where all the source files are, you'll need to create two subdirs and then place Pham's exe in the final dir, so it'll look like this: main source dir/sub1/sub2/pham.exe
E.g., for me it's: C:\Users\Samuel\Documents\GitHub\Phamhilator\Phamhilator\bin\Debug\Phamhilator.exe
. (The second Phamhilator dir is the main source dir.)
Since it's still in beta, this sort of stuff has to be done manually for now ;)